Experiment information
Accession CRX000127
Organism Homo sapiens
Title Loss of 5-hydroxymethylcytosine is linked to gene body hypermethylation in kidney cancer
BioProject PRJCA000102
BioSample SAMC000292
Platform Illumina HiSeq 2000
Library
Library name Construction protocol Strategy Source Selection Layout
5-mC sequencing libraries were constructed as described with minor modifications. Jiang, L., et al., Sperm, but not oocyte, DNA methylome is inherited by zebrafish early embryos. Cell, 2013. 153(4): p. 773-84 Bisulfite-Seq GENOMIC unspecified FRAGMENT
Processing Planned read length (bp): 100
Release date2016-03-18
Run
Run Accession Release date Run Data File Information
File nameFile size (MB)
CRR000136 2016-03-18 5mc-P1-N-130531_r1.fastq.gz
5mc-P1-N-130531_r2.fastq.gz
5mc-P1-N-130821-lane7_r1.fastq.gz
5mc-P1-N-130821-lane7_r2.fastq.gz
5mc-P1-N-130821-lane8_r1.fastq.gz
5mc-P1-N-130821-lane8_r2.fastq.gz
1,292.37
1,182.48
15,270.04
14,788.06
16,107.13
15,926.61
CRR000137 2016-03-18 5mc-P1-T-130531_r1.fastq.gz
5mc-P1-T-130531_r2.fastq.gz
5mc-P1-T-130821-lane4_r1.fastq.gz
5mc-P1-T-130821-lane4_r2.fastq.gz
5mc-P1-T-130821-lane5_r1.fastq.gz
5mc-P1-T-130821-lane5_r2.fastq.gz
1,503.55
1,358.61
16,767.06
16,065.73
16,895.46
16,177.51
CRR000150 2016-03-18 5mc-P2-N-130515_r1.fastq.gz
5mc-P2-N-130515_r2.fastq.gz
5mc-P2-T-130515_r1.fastq.gz
5mc-P2-T-130515_r2.fastq.gz
11,360.11
10,464.17
14,001.93
13,020.43
CRR000168 2016-03-18 5mc-P2-N-130531_r1.fastq.gz
5mc-P2-N-130531_r2.fastq.gz
5mc-P2-N-140530-lane7_r1.fastq.gz
5mc-P2-N-140530-lane7_r2.fastq.gz
5mc-P2-T-130531_r1.fastq.gz
5mc-P2-T-130531_r2.fastq.gz
1,897.42
1,709.53
16,648.38
16,575.9
1,275.98
1,155.26
CRR000170 2016-03-18 5mc-P2-T-140530-lane6_r1.fastq.gz
5mc-P2-T-140530-lane6_r2.fastq.gz
16,097.81
15,904.41
SubmitterZhengZheng Xu (xdzperfect@163.com)
OrganizationsBeijing Institute of Genomics, Chinese Academy of Sciences
Date submitted2015-11-17
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