Experiment information
Accession CRX000128
Organism Homo sapiens
Title Loss of 5-hydroxymethylcytosine is linked to gene body hypermethylation in kidney cancer
BioProject PRJCA000102
BioSample SAMC000292
Platform Illumina HiSeq 2000
Library
Library name Construction protocol Strategy Source Selection Layout
tab-seq The sequencing libraries were constructed as described with minor modification. Briefly, genomic DNA with spike-in controls was glucoslyated and oxidized using the kit from Wisegene (Cat#: K001). Then, the DNA was further directed to bisulfite conversion Bisulfite-Seq GENOMIC unspecified FRAGMENT
Processing Planned read length (bp): 100
Release date2016-03-18
Run
Run Accession Release date Run Data File Information
File nameFile size (MB)
CRR000142 2016-03-18 5hmc-P1-N-130531_r1.fastq.gz
5hmc-P1-N-130531_r2.fastq.gz
5hmc-P1-N-130627_r1.fastq.gz
5hmc-P1-N-130627_r2.fastq.gz
5hmc-P1-N-130821-lane2_r1.fastq.gz
5hmc-P1-N-130821-lane2_r2.fastq.gz
1,300.15
1,179.2
1,974.95
1,736.99
15,987.54
15,025.87
CRR000143 2016-03-18 5hmc-P1-N-130821-lane3_r1.fastq.gz
5hmc-P1-N-130821-lane3_r2.fastq.gz
5hmc-P1-T-130531_r1.fastq.gz
5hmc-P1-T-130531_r2.fastq.gz
5hmc-P1-T-130627_r1.fastq.gz
5hmc-P1-T-130627_r2.fastq.gz
16,138.42
15,211.12
1,310.62
1,201.03
318.86
282.08
CRR000145 2016-03-18 5hmc-P1-T-130821-lane1_r1.fastq.gz
5hmc-P1-T-130821-lane1_r2.fastq.gz
5hmc-P1-T-130830-lane1_r1.fastq.gz
5hmc-P1-T-130830-lane1_r2.fastq.gz
5hmc-P2-N-130829-lane4_r1.fastq.gz
5hmc-P2-N-130829-lane4_r2.fastq.gz
15,016.07
14,285.95
9,295.39
8,478.24
2,622.69
2,386.17
CRR000148 2016-03-18 5hmc-P2-N-140530-lane5_r1.fastq.gz
5hmc-P2-N-140530-lane5_r2.fastq.gz
5hmc-P2-T-130829-lane4_r1.fastq.gz
5hmc-P2-T-130829-lane4_r2.fastq.gz
5hmc-P2-T-140530-lane4_r1.fastq.gz
5hmc-P2-T-140530-lane4_r2.fastq.gz
11,963.16
11,250.96
4,010.2
3,640.33
12,623.38
12,161.99
CRR000149 2016-03-18 5hmc-P2-N-130728_r1.fastq.gz
5hmc-P2-N-130728_r2.fastq.gz
5hmc-P2-T-130728_r1.fastq.gz
5hmc-P2-T-130728_r2.fastq.gz
29,715.38
27,145.61
31,603.28
28,912.19
SubmitterZhengZheng Xu (xdzperfect@163.com)
OrganizationsBeijing Institute of Genomics, Chinese Academy of Sciences
Date submitted2015-11-17
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