Experiment information
Accession CRX008024
Organism Mus musculus cytomegalovirus 2
Title 2-cell Control RNA-seq
BioProject PRJCA000241
BioSample SAMC007621
Platform Illumina HiSeq 4000
Library
Library name Construction protocol Strategy Source Selection Layout
the RNA-seq data were mapped to the mm10 genome by STAR (version 2.5.2b) (Dobin et al., 2013)with default parameters. Then the gene expression FPKM was calculated by Cuffinks (version 2.2.1) using the refFat database from the UCSC genome browser. The track is sequencing depth normalized and generated at 10bp window. Maternal and Paternal gene expression is based on assigned reads from SNP tracking method to distinguish maternal or paternal origin. WGA TRANSCRIPTOMIC PolyA PAIRED
Processing Planned read length (bp) for mate 1: 150
Planned read length (bp) for mate 2: 150
Release date2017-07-13
Run
Run Accession Release date Run Data File Information
File nameFile size (MB)
CRR008799 2017-07-13 2cellRNA_R1_1.fq.gz
2cellRNA_R1_2.fq.gz
1,091.14
1,214.6
CRR008800 2017-07-13 2cellRNA_R2_1.fq.gz
2cellRNA_R2_2.fq.gz
1,128.57
1,290.26
SubmitterXuepeng Chen (chenxp@big.ac.cn)
OrganizationsBeijing Institute of Genomics, Chinese Academy of Sciences
Date submitted2016-11-28