Experiment information
Accession CRX019716
Organism Proteobacteria
Title start experiment_rep3
BioProject PRJCA000532
BioSample SAMC016304
Platform Illumina MiSeq
Library
Library name Construction protocol Strategy Source Selection Layout
All amplicons per time point and replicate were pooled on a mass basis to yield 18 amplicon pools in total: 16S rRNA : narG : napA : nrfA : nirS : nirK = 46 : 15 : 21 : 10 : 8. Adaptamers including barcodes were ligated to amplicon pools for sequencing library generation according to standard protocols prior to paired-end sequencing on a Illumina MiSeq platform utilizing V2 chemistry (2 x 250 bp). RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED
Processing Planned read length (bp) for mate 1: 250
Planned read length (bp) for mate 2: 250
Insert size (bp): 50
Release date2019-02-09
Run
Run Accession Release date Run Data File Information
File nameFile size (MB)
CRR021488 2019-02-09 pattern01_pattern02_1201_C_R1_001_f.fastq.gz
pattern01_pattern02_1201_C_R2_001_f.fastq.gz
2.73
3.47
CRR021489 2019-02-09 pattern02_pattern01_1201_C_R1_001_f.fastq.gz
pattern02_pattern01_1201_C_R2_001_f.fastq.gz
3.51
2.59
CRR021490 2019-02-09 pattern03_pattern04_1201_C_R1_001_f.fastq.gz
pattern03_pattern04_1201_C_R2_001_f.fastq.gz
2.29
2.87
CRR021491 2019-02-09 pattern04_pattern03_1201_C_R1_001_f.fastq.gz
pattern04_pattern03_1201_C_R2_001_f.fastq.gz
2.99
2.43
CRR021492 2019-02-09 pattern05_pattern06_1201_C_R1_001_f.fastq.gz
pattern05_pattern06_1201_C_R2_001_f.fastq.gz
0.84
1.19
CRR021493 2019-02-09 pattern06_pattern05_1201_C_R1_001_f.fastq.gz
pattern06_pattern05_1201_C_R2_001_f.fastq.gz
1.46
1.06
CRR021494 2019-02-09 pattern07_pattern08_1201_C_R1_001_f.fastq.gz
pattern07_pattern08_1201_C_R2_001_f.fastq.gz
2.42
2.94
CRR021495 2019-02-09 pattern08_pattern07_1201_C_R1_001_f.fastq.gz
pattern08_pattern07_1201_C_R2_001_f.fastq.gz
2.86
2.41
CRR021496 2019-02-09 pattern09_pattern10_1201_C_R1_001_f.fastq.gz
pattern09_pattern10_1201_C_R2_001_f.fastq.gz
3.41
4.67
CRR021497 2019-02-09 pattern10_pattern09_1201_C_R1_001_f.fastq.gz
pattern10_pattern09_1201_C_R2_001_f.fastq.gz
5.06
3.93
CRR021498 2019-02-09 pattern11_pattern12_1201_C_R1_001_f.fastq.gz
pattern11_pattern12_1201_C_R2_001_f.fastq.gz
0.43
0.62
CRR021499 2019-02-09 pattern12_pattern11_1201_C_R1_001_f.fastq.gz
pattern12_pattern11_1201_C_R2_001_f.fastq.gz
0.63
0.44
SubmitterDianming Wu (dmwu@geo.ecnu.edu.cn)
OrganizationsEast China Normal University
Date submitted2017-09-05