Experiment information
Accession CRX029002
Organism Oryza sativa
Title MOC3 ChIP-seq data of Input sample
BioProject PRJCA000996
BioSample SAMC044933
Platform Illumina HiSeq 2500
Library
Library name Construction protocol Strategy Source Selection Layout
MOC3 ChIP-seq data of Input sample To conduct MOC3 ChIP-seq assay, 4 g transgenic calli expressing ACT:MOC3-GFP in Nipponbare were cross-linked in 1% formaldehyde under vacuum, and the cross-linking was stopped with 0.125 M glycine. The samples were ground to powder in liquid nitrogen, and the nuclei were isolated. Anti-GFP polyclonal antibodies (Abcam, catalog no. ab290) were used to immunoprecipitate the protein-DNA complex, and the precipitated DNA was recovered and used for the ChIP-seq assay according to the method described previously (Fu et al., 2012) with slight modifications. ChIP-seq data analysis was performed as described previously (Lu et al., 2013). ChIP-Seq GENOMIC ChIP PAIRED
Processing Planned read length (bp) for mate 1: 100
Planned read length (bp) for mate 2: 100
Insert size (bp): 300
Release date2018-09-23
Run
Run accession Run data file information
File nameFile size (MB)
CRR032294 CRR032294_f1.fastq.gz
CRR032294_r2.fastq.gz
1,603.79
1,333.72
Submittergaoneng shao (gnshao@genetics.ac.cn)
OrganizationInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences
Date submitted2018-08-20
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