| Accession | CRX036739 |
| Organism | Mus musculus |
| Title | SG-A_HiC1 |
| BioProject | PRJCA001164 |
| BioSample | SAMC051445 |
| Platform | Illumina HiSeq X Ten |
| Library |
| Library name |
Construction protocol |
Strategy |
Source |
Selection |
Layout |
|
The Hi-C experiment was performed follow the in-situ Hi-C protocol. Briefly, cells were lysis and chromatin was digested by MobI, then biotin fill-in and Hi-C ligation. After ligation, DNA was purified and sonicated to 200-500bp for library construction follow the . DNA was end-repaired, dATP attached and adapter ligated follow the in-situ Hi-C protocl. After adapter ligation DNA was PCR amplified and library fragments between 200-500bp were purified for sequencing. The purified library was sequenced on HiSeq X ten. |
Hi-C |
GENOMIC |
Restriction Digest |
PAIRED
|
|
| Processing |
Planned read length (bp) for mate 1: 150
Planned read length (bp) for mate 2: 150
Insert size (bp): 300
|
| Release date | 2020-12-02 |
|---|
| Run |
| Run accession |
Run data file information |
| File name | File size (MB) |
|---|
| CRR041309 |
CRR041309_f1.fastq.gz
CRR041309_r2.fastq.gz
|
48,184.86
59,327.12
|
|
| Submitter | Xiaoyuan Song (songxy5@ustc.edu.cn) |
|---|
| Organization | University of Science and Technology of China |
|---|
| Date submitted | 2018-12-14 |
|---|
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