1. Home
  2. GSA
  3. CRA001576
CRA001576 Information
Title: SNP sequence
BioProject: PRJCA001410 /
Release date: 2019-06-05
Files: 622
File size: 20.50 GB
Publication
Article title
Target sequencing reveals genetic diversity, population structure, core-SNP markers, and fruit shape-associated loci in pepper varieties
Journal name
BMC Plant Biology
Year
2019
DOI
10.1186/s12870-019-2122-2
PubMed ID
31870303

Dataset Downlaod
MetaData:
CRA001576.xlsx
Files:
HTTPS：https://download.cncb.ac.cn/gsa/CRA001576
Recommend EgdeTurbo(Test)： Download  
Aspera Command Line:  Help  
FTP：ftp://download.big.ac.cn/gsa/CRA001576

 Note: HTTP download speed may be slow,It is highly recommended that you download the dataset using Egde Turbo or a dedicated FTP tool (such as FileZilla Client).

 Note: EgdeTurbo supports Linux command line and Chrome, Edge and Firefox browsers for Windows/Mac platforms.

Experiments & Runs
Experiment accession Title Taxon name Platform Sample accession
CRX049460 SNP sequence in LJ-707 Capsicum Illumina HiSeq X Ten SAMC069256
Run accession Run alias Run data file information
CRR055005 first repeat of SNP sequence in LJ-707 File: CRR055005_f1.fastq.gz
File: CRR055005_r2.fastq.gz
CRR055006 second repeat of SNP sequence in LJ-707 File: CRR055006_f1.fastq.gz
File: CRR055006_r2.fastq.gz
CRX049459 SNP sequence in LJ-703 Capsicum Illumina HiSeq X Ten SAMC069255
Run accession Run alias Run data file information
CRR055003 first repeat of SNP sequence in LJ-703 File: CRR055003_f1.fastq.gz
File: CRR055003_r2.fastq.gz
CRR055004 second repeat of SNP sequence in LJ-703 File: CRR055004_f1.fastq.gz
File: CRR055004_r2.fastq.gz
CRX049458 SNP sequence in LJ-689 Capsicum Illumina HiSeq X Ten SAMC069254
Run accession Run alias Run data file information
CRR055001 first repeat of SNP sequence in LJ-689 File: CRR055001_f1.fastq.gz
File: CRR055001_r2.fastq.gz
CRR055002 second repeat of SNP sequence in LJ-689 File: CRR055002_f1.fastq.gz
File: CRR055002_r2.fastq.gz
CRX049457 SNP sequence in LJ-679 Capsicum Illumina HiSeq X Ten SAMC069253
Run accession Run alias Run data file information
CRR054999 first repeat of SNP sequence in LJ-679 File: CRR054999_f1.fastq.gz
File: CRR054999_r2.fastq.gz
CRR055000 second repeat of SNP sequence in LJ-679 File: CRR055000_f1.fastq.gz
File: CRR055000_r2.fastq.gz
CRX049456 SNP sequence in LJ-675 Capsicum Illumina HiSeq X Ten SAMC069252
Run accession Run alias Run data file information
CRR054997 first repeat of SNP sequence in LJ-675 File: CRR054997_f1.fastq.gz
File: CRR054997_r2.fastq.gz
CRR054998 second repeat of SNP sequence in LJ-675 File: CRR054998_f1.fastq.gz
File: CRR054998_r2.fastq.gz
CRX049455 SNP sequence in LJ-667 Capsicum Illumina HiSeq X Ten SAMC069251
Run accession Run alias Run data file information
CRR054995 first repeat of SNP sequence in LJ-667 File: CRR054995_f1.fastq.gz
File: CRR054995_r2.fastq.gz
CRR054996 second repeat of SNP sequence in LJ-667 File: CRR054996_f1.fastq.gz
File: CRR054996_r2.fastq.gz
CRX049454 SNP sequence in LJ-657 Capsicum Illumina HiSeq X Ten SAMC069250
Run accession Run alias Run data file information
CRR054993 first repeat of SNP sequence in LJ-657 File: CRR054993_f1.fastq.gz
File: CRR054993_r2.fastq.gz
CRR054994 second repeat of SNP sequence in LJ-657 File: CRR054994_f1.fastq.gz
File: CRR054994_r2.fastq.gz
CRX049453 SNP sequence in LJ-652 Capsicum Illumina HiSeq X Ten SAMC069249
Run accession Run alias Run data file information
CRR054991 first repeat of SNP sequence in LJ-652 File: CRR054991_f1.fastq.gz
File: CRR054991_r2.fastq.gz
CRR054992 second repeat of SNP sequence in LJ-652 File: CRR054992_f1.fastq.gz
File: CRR054992_r2.fastq.gz
CRX049452 SNP sequence in LJ-649 Capsicum Illumina HiSeq X Ten SAMC069248
Run accession Run alias Run data file information
CRR054989 first repeat of SNP sequence in LJ-649 File: CRR054989_f1.fastq.gz
File: CRR054989_r2.fastq.gz
CRR054990 second repeat of SNP sequence in LJ-649 File: CRR054990_f1.fastq.gz
File: CRR054990_r2.fastq.gz
CRX049451 SNP sequence in LJ-645 Capsicum Illumina HiSeq X Ten SAMC069247
Run accession Run alias Run data file information
CRR054987 first repeat of SNP sequence in LJ-645 File: CRR054987_f1.fastq.gz
File: CRR054987_r2.fastq.gz
CRR054988 second repeat of SNP sequence in LJ-645 File: CRR054988_f1.fastq.gz
File: CRR054988_r2.fastq.gz
CRX049450 SNP sequence in LJ-644 Capsicum Illumina HiSeq X Ten SAMC069246
Run accession Run alias Run data file information
CRR054985 first repeat of SNP sequence in LJ-644 File: CRR054985_f1.fastq.gz
File: CRR054985_r2.fastq.gz
CRR054986 second repeat of SNP sequence in LJ-644 File: CRR054986_f1.fastq.gz
File: CRR054986_r2.fastq.gz
CRX049449 SNP sequence in LJ-639 Capsicum Illumina HiSeq X Ten SAMC069245
Run accession Run alias Run data file information
CRR054983 first repeat of SNP sequence in LJ-639 File: CRR054983_f1.fastq.gz
File: CRR054983_r2.fastq.gz
CRR054984 second repeat of SNP sequence in LJ-639 File: CRR054984_f1.fastq.gz
File: CRR054984_r2.fastq.gz
CRX049448 SNP sequence in LJ-625 Capsicum Illumina HiSeq X Ten SAMC069244
Run accession Run alias Run data file information
CRR054981 first repeat of SNP sequence in LJ-625 File: CRR054981_f1.fastq.gz
File: CRR054981_r2.fastq.gz
CRR054982 second repeat of SNP sequence in LJ-625 File: CRR054982_f1.fastq.gz
File: CRR054982_r2.fastq.gz
CRX049447 SNP sequence in LJ-623 Capsicum Illumina HiSeq X Ten SAMC069243
Run accession Run alias Run data file information
CRR054979 first repeat of SNP sequence in LJ-623 File: CRR054979_f1.fastq.gz
File: CRR054979_r2.fastq.gz
CRR054980 second repeat of SNP sequence in LJ-623 File: CRR054980_f1.fastq.gz
File: CRR054980_r2.fastq.gz
CRX049446 SNP sequence in LJ-612 Capsicum Illumina HiSeq X Ten SAMC069242
Run accession Run alias Run data file information
CRR054977 first repeat of SNP sequence in LJ-612 File: CRR054977_f1.fastq.gz
File: CRR054977_r2.fastq.gz
CRR054978 second repeat of SNP sequence in LJ-612 File: CRR054978_f1.fastq.gz
File: CRR054978_r2.fastq.gz
CRX049445 SNP sequence in LJ-607 Capsicum Illumina HiSeq X Ten SAMC069241
Run accession Run alias Run data file information
CRR054975 first repeat of SNP sequence in LJ-607 File: CRR054975_f1.fastq.gz
File: CRR054975_r2.fastq.gz
CRR054976 second repeat of SNP sequence in LJ-607 File: CRR054976_f1.fastq.gz
File: CRR054976_r2.fastq.gz
CRX049444 SNP sequence in LJ-603 Capsicum Illumina HiSeq X Ten SAMC069240
Run accession Run alias Run data file information
CRR054973 first repeat of SNP sequence in LJ-603 File: CRR054973_f1.fastq.gz
File: CRR054973_r2.fastq.gz
CRR054974 second repeat of SNP sequence in LJ-603 File: CRR054974_f1.fastq.gz
File: CRR054974_r2.fastq.gz
CRX049443 SNP sequence in LJ-599 Capsicum Illumina HiSeq X Ten SAMC069239
Run accession Run alias Run data file information
CRR054971 first repeat of SNP sequence in LJ-599 File: CRR054971_f1.fastq.gz
File: CRR054971_r2.fastq.gz
CRR054972 second repeat of SNP sequence in LJ-599 File: CRR054972_f1.fastq.gz
File: CRR054972_r2.fastq.gz
CRX049442 SNP sequence in LJ-591 Capsicum Illumina HiSeq X Ten SAMC069238
Run accession Run alias Run data file information
CRR054969 first repeat of SNP sequence in LJ-591 File: CRR054969_f1.fastq.gz
File: CRR054969_r2.fastq.gz
CRR054970 second repeat of SNP sequence in LJ-591 File: CRR054970_f1.fastq.gz
File: CRR054970_r2.fastq.gz
CRX049441 SNP sequence in LJ-589 Capsicum Illumina HiSeq X Ten SAMC069237
Run accession Run alias Run data file information
CRR054967 first repeat of SNP sequence in LJ-589 File: CRR054967_f1.fastq.gz
File: CRR054967_r2.fastq.gz
CRR054968 second repeat of SNP sequence in LJ-589 File: CRR054968_f1.fastq.gz
File: CRR054968_r2.fastq.gz
Submitter:Yang Jingjing (yangjingjing@nercv.org)
Organization:Beijing Academy of Agriculture and Forestry Sciences
Date submitted:2019-05-06