CRA001919 Information
Title: Long-read assembly of the Chinese rhesus macaque genome and identification of ape-specific structural variants
BioProject: PRJCA001197 / CRP001066
Release date: 2019-09-03
Experiments & Runs
Experiment Accession Title Taxon Name Platform Sample accession
CRX061284 rheMacS HiC data Macaca mulatta Illumina HiSeq X Ten SAMC053454
CRS048725
Run Accession Run Alias Run Data File Information
CRR071913 rheMacS-HiC-01 File: CRR071913_f1.fastq.gz
File: CRR071913_r2.fastq.gz
CRR071914 rheMacS-HiC-02 File: CRR071914_f1.fastq.gz
File: CRR071914_r2.fastq.gz
CRR071915 rheMacS-HiC-03 File: CRR071915_f1.fastq.gz
File: CRR071915_r2.fastq.gz
CRR071916 rheMacS-HiC-04 File: CRR071916_f1.fastq.gz
File: CRR071916_r2.fastq.gz
CRR071917 rheMacS-HiC-05 File: CRR071917_f1.fastq.gz
File: CRR071917_r2.fastq.gz
CRR071918 rheMacS-HiC-06 File: CRR071918_f1.fastq.gz
File: CRR071918_r2.fastq.gz
CRX059307 rheMacS Iso-seq data Macaca mulatta PacBio Sequel SAMC090964
CRS048780
Run Accession Run Alias Run Data File Information
CRR069915 rheMacS-Iso-seq-01 File: CRR069915.bam
CRR069916 rheMacS-Iso-seq-02 File: CRR069916.bam
CRR069917 rheMacS-Iso-seq-03 File: CRR069917.bam
CRR069918 rheMacS-Iso-seq-04 File: CRR069918.bam
CRR069919 rheMacS-Iso-seq-05 File: CRR069919.bam
CRR069920 rheMacS-Iso-seq-06 File: CRR069920.bam
CRR069921 rheMacS-Iso-seq-07 File: CRR069921.bam
CRR069922 rheMacS-Iso-seq-08 File: CRR069922.bam
CRR069923 rheMacS-Iso-seq-09 File: CRR069923.bam
CRR069924 rheMacS-Iso-seq-10 File: CRR069924.bam
CRR069925 rheMacS-Iso-seq-11 File: CRR069925.bam
CRR069926 rheMacS-Iso-seq-12 File: CRR069926.bam
CRR069927 rheMacS-Iso-seq-13 File: CRR069927.bam
CRR069928 rheMacS-Iso-seq-14 File: CRR069928.bam
CRR069929 rheMacS-Iso-seq-15 File: CRR069929.bam
CRR069930 rheMacS-Iso-seq-16 File: CRR069930.bam
CRX059306 rheMacS RNA-seq16 Macaca mulatta Illumina HiSeq X Ten SAMC090952
CRS048779
Run Accession Run Alias Run Data File Information
CRR069914 rheMacS-RNA-seq-16 File: CRR069914_f1.fq.gz
File: CRR069914_r2.fq.gz
CRX059305 rheMacS RNA-seq15 Macaca mulatta Illumina HiSeq X Ten SAMC090960
CRS048778
Run Accession Run Alias Run Data File Information
CRR069913 rheMacS-RNA-seq-15 File: CRR069913_f1.fq.gz
File: CRR069913_r2.fq.gz
CRX059304 rheMacS RNA-seq14 Macaca mulatta Illumina HiSeq X Ten SAMC090958
CRS048777
Run Accession Run Alias Run Data File Information
CRR069912 rheMacS-RNA-seq-14 File: CRR069912_f1.fq.gz
File: CRR069912_r2.fq.gz
CRX059303 rheMacS RNA-seq13 Macaca mulatta Illumina HiSeq X Ten SAMC090961
CRS048776
Run Accession Run Alias Run Data File Information
CRR069911 rheMacS-RNA-seq-13 File: CRR069911_f1.fq.gz
File: CRR069911_r2.fq.gz
CRX059302 rheMacS RNA-seq12 Macaca mulatta Illumina HiSeq X Ten SAMC090957
CRS048775
Run Accession Run Alias Run Data File Information
CRR069910 rheMacS-RNA-seq-12 File: CRR069910_f1.fq.gz
File: CRR069910_r2.fq.gz
CRX059301 rheMacS RNA-seq11 Macaca mulatta Illumina HiSeq X Ten SAMC090955
CRS048774
Run Accession Run Alias Run Data File Information
CRR069909 rheMacS-RNA-seq-11 File: CRR069909_f1.fq.gz
File: CRR069909_r2.fq.gz
CRX059300 rheMacS RNA-seq10 Macaca mulatta Illumina HiSeq X Ten SAMC090963
CRS048773
Run Accession Run Alias Run Data File Information
CRR069908 rheMacS-RNA-seq-10 File: CRR069908_f1.fq.gz
File: CRR069908_r2.fq.gz
CRX059299 rheMacS RNA-seq09 Macaca mulatta Illumina HiSeq X Ten SAMC090953
CRS048772
Run Accession Run Alias Run Data File Information
CRR069907 rheMacS-RNA-seq-09 File: CRR069907_f1.fq.gz
File: CRR069907_r2.fq.gz
CRX059298 rheMacS RNA-seq08 Macaca mulatta Illumina HiSeq X Ten SAMC090949
CRS048771
Run Accession Run Alias Run Data File Information
CRR069906 rheMacS-RNA-seq-08 File: CRR069906_f1.fq.gz
File: CRR069906_r2.fq.gz
CRX059297 rheMacS RNA-seq07 Macaca mulatta Illumina HiSeq X Ten SAMC090951
CRS048770
Run Accession Run Alias Run Data File Information
CRR069905 rheMacS-RNA-seq-07 File: CRR069905_f1.fq.gz
File: CRR069905_r2.fq.gz
CRX059296 rheMacS RNA-seq06 Macaca mulatta Illumina HiSeq X Ten SAMC090948
CRS048769
Run Accession Run Alias Run Data File Information
CRR069904 rheMacS-RNA-seq-06 File: CRR069904_f1.fq.gz
File: CRR069904_r2.fq.gz
CRX059295 rheMacS RNA-seq05 Macaca mulatta Illumina HiSeq X Ten SAMC090959
CRS048768
Run Accession Run Alias Run Data File Information
CRR069903 rheMacS-RNA-seq-05 File: CRR069903_f1.fq.gz
File: CRR069903_r2.fq.gz
CRX059294 rheMacS RNA-seq04 Macaca mulatta Illumina HiSeq X Ten SAMC090962
CRS048767
Run Accession Run Alias Run Data File Information
CRR069902 rheMacS-RNA-seq-04 File: CRR069902_f1.fq.gz
File: CRR069902_r2.fq.gz
CRX059293 rheMacS RNA-seq03 Macaca mulatta Illumina HiSeq X Ten SAMC090950
CRS048766
Run Accession Run Alias Run Data File Information
CRR069901 rheMacS-RNA-seq-03 File: CRR069901_f1.fq.gz
File: CRR069901_r2.fq.gz
CRX059292 rheMacS RNA-seq02 Macaca mulatta Illumina HiSeq X Ten SAMC090956
CRS048765
Run Accession Run Alias Run Data File Information
CRR069900 rheMacS-RNA-seq-02 File: CRR069900_f1.fq.gz
File: CRR069900_r2.fq.gz
CRX059291 rheMacS RNA-seq01 Macaca mulatta Illumina HiSeq X Ten SAMC090954
CRS048764
Run Accession Run Alias Run Data File Information
CRR069899 rheMacS-RNA-seq-01 File: CRR069899_f1.fq.gz
File: CRR069899_r2.fq.gz
CRX059230 rheMacS Bionano data Macaca mulatta BioNano SAPHYR SAMC053454
CRS048725
Run Accession Run Alias Run Data File Information
CRR069760 rheMacS-Bionano01 File: CRR069760.bnx
CRR069761 rheMacS-Bionano02 File: CRR069761.bnx
CRR069762 rheMacS-Bionano03 File: CRR069762.bnx
CRR069763 rheMacS-Bionano04 File: CRR069763.bnx
CRR069764 rheMacS-Bionano05 File: CRR069764.bnx
CRR069765 rheMacS-Bionano06 File: CRR069765.bnx
CRR069766 rheMacS-Bionano07 File: CRR069766.bnx
CRR069767 rheMacS-Bionano08 File: CRR069767.bnx
CRR069768 rheMacS-Bionano09 File: CRR069768.bnx
CRR069769 rheMacS-Bionano10 File: CRR069769.bnx
CRR069770 rheMacS-Bionano11 File: CRR069770.bnx
CRX059227 rheMacS whole genome sequencing data by Illumina Macaca mulatta Illumina HiSeq X Ten SAMC053454
CRS048725
Run Accession Run Alias Run Data File Information
CRR069742 rheMacS-Illumina File: CRR069742_f1.fastq.gz
File: CRR069742_r2.fastq.gz
Submitter:Yaoxi He (heyaoxi@mail.kiz.ac.cn)
Organizations:Kunming Institute of Zoology, Chinese Academy of Sciences
Date submitted:2019-08-22