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Experiment information

Accession

CRX064190

Organism

Solanum tuberosum

Title

E3

BioProject

BioSample

Platform

OXFORD_NANOPORE GridION

Library

Library name	Construction protocol	Strategy	Source	Selection	Layout
	The high-molecular-weight DNA (12 -20 kb in length) was extracted from in vitro seedlings based on the Oxford Nanopore\'s \'\'1D gDNA selection for long reads\'\' protocol. The library was constructed using LSK108 kit and sequenced using 38 R9.4 flow cells on the Nanopore GridION X5 sequencer. The base calling was perfromed using Albacore in MinKNOW package.	WGS	GENOMIC	size fractionation	SINGLE

Processing

Planned read length (bp) for mate 1: 150
Planned read length (bp) for mate 2: 150
Insert size (bp): 300
Planned read length (bp): 150

Release date

2019-11-02

Run

Run accession	Run data file information
Run accession	File name	File size (MB)
CRR075040	CRR075040.fq.gz	4,018.16
CRR075041	CRR075041.fq.gz	2,294.37
CRR075042	CRR075042.fq.gz	3,036.92
CRR075043	CRR075043.fq.gz	5,160.08
CRR075044	CRR075044.fq.gz	5,439.47
CRR075045	CRR075045.fq.gz	3,556.33
CRR075046	CRR075046.fq.gz	4,799.1
CRR075047	CRR075047.fq.gz	1,754.83
CRR075048	CRR075048.fq.gz	1,400.81
CRR075049	CRR075049.fq.gz	1,046
CRR075050	CRR075050.fq.gz	1,710.04
CRR075051	CRR075051.fq.gz	2,296.21
CRR075052	CRR075052.fq.gz	1,793.03
CRR075053	CRR075053.fq.gz	2,168.21
CRR075054	CRR075054.fq.gz	3,783.91
CRR075055	CRR075055.fq.gz	4,416.92
CRR075056	CRR075056.fq.gz	3,027.1
CRR075057	CRR075057.fq.gz	4,518.93
CRR075058	CRR075058.fq.gz	4,753.12
CRR075059	CRR075059.fq.gz	4,194.55
CRR075060	CRR075060.fq.gz	4,516.45
CRR075061	CRR075061.fq.gz	2,578.79
CRR075062	CRR075062.fq.gz	1,684.63
CRR075063	CRR075063.fq.gz	1,269.48
CRR075064	CRR075064.fq.gz	2,556.59
CRR075065	CRR075065.fq.gz	1,916.9
CRR075066	CRR075066.fq.gz	2,720.6
CRR075067	CRR075067.fq.gz	4,451.73
CRR075068	CRR075068.fq.gz	3,271.12
CRR075069	CRR075069.fq.gz	3,117.51
CRR075070	CRR075070.fq.gz	3,874.75
CRR075071	CRR075071.fq.gz	2,800.04
CRR075072	CRR075072.fq.gz	2,619.47
CRR075073	CRR075073.fq.gz	1,724.66
CRR075074	CRR075074.fq.gz	1,759.98
CRR075075	CRR075075.fq.gz	1,396.45
CRR075076	CRR075076.fq.gz	3,888.53
CRR075077	CRR075077.fq.gz	3,833.87

Submitter

Die Tang (tangdie_solab@163.com)

Organization

Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences

Date submitted

2019-09-28

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