CRA000345 Information
Title: genome and transcriptome of rat
BioProject: PRJCA000251 /
Release date: 2017-12-08
Files: 464
File size: 1840.41 GB
Publication
Journal name
Molecular Biology and Evolution
Year
2018
DOI
10.1093/molbev/msx276
PubMed ID
29087519

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Experiments & Runs
Experiment accession Title Taxon name Platform Sample accession
CRX019650 transcriptome cortex_L3 Rattus norvegicus Illumina HiSeq 2000 SAMC016507
Run accession Run alias Run data file information
CRR021383 transcriptome cortex_L3 File: CRR021383_f1.fq.gz
File: CRR021383_r2.fq.gz
CRX019649 transcriptome cortex_L2 Rattus norvegicus Illumina HiSeq 2000 SAMC016506
Run accession Run alias Run data file information
CRR021382 transcriptome cortex_L2 File: CRR021382_f1.fq.gz
File: CRR021382_r2.fq.gz
CRX019648 transcriptome cortex_L1 Rattus norvegicus Illumina HiSeq 2000 SAMC016505
Run accession Run alias Run data file information
CRR021381 transcriptome cortex_L1 File: CRR021381_f1.fq.gz
File: CRR021381_r2.fq.gz
CRX019647 genome of SHR8 Rattus norvegicus Illumina HiSeq 2500 SAMC016504
Run accession Run alias Run data file information
CRR021380 genome of SHR8 File: CRR021380_f1.fastq.gz
File: CRR021380_r2.fastq.gz
CRX019646 genome of SHR7 Rattus norvegicus Illumina HiSeq 2500 SAMC016503
Run accession Run alias Run data file information
CRR021378 genome of SHR7_1 File: CRR021378_f1.fastq.gz
File: CRR021378_r2.fastq.gz
CRR021379 genome of SHR7_2 File: CRR021379_f1.fastq.gz
File: CRR021379_r2.fastq.gz
CRX019645 genome of SHR6 Rattus norvegicus Illumina HiSeq 2500 SAMC016502
Run accession Run alias Run data file information
CRR021376 genome of SHR6_1 File: CRR021376_f1.fastq.gz
File: CRR021376_r2.fastq.gz
CRR021377 genome of SHR6_2 File: CRR021377_f1.fastq.gz
File: CRR021377_r2.fastq.gz
CRX019644 genome of SHR5 Rattus norvegicus Illumina HiSeq 2500 SAMC016501
Run accession Run alias Run data file information
CRR021374 genome of SHR5_1 File: CRR021374_f1.fastq.gz
File: CRR021374_r2.fastq.gz
CRR021375 genome of SHR5_2 File: CRR021375_f1.fastq.gz
File: CRR021375_r2.fastq.gz
CRX019643 genome of SHR4 Rattus norvegicus Illumina HiSeq 2500 SAMC016500
Run accession Run alias Run data file information
CRR021372 genome of SHR4_1 File: CRR021372_f1.fastq.gz
File: CRR021372_r2.fastq.gz
CRR021373 genome of SHR4_2 File: CRR021373_f1.fastq.gz
File: CRR021373_r2.fastq.gz
CRX019642 genome of SHR3 Rattus norvegicus Illumina HiSeq 2500 SAMC016499
Run accession Run alias Run data file information
CRR021370 genome of SHR3_1 File: CRR021370_f1.fastq.gz
File: CRR021370_r2.fastq.gz
CRR021371 genome of SHR3_2 File: CRR021371_f1.fastq.gz
File: CRR021371_r2.fastq.gz
CRX019641 genome of SHR2 Rattus norvegicus Illumina HiSeq 2500 SAMC016498
Run accession Run alias Run data file information
CRR021368 genome of SHR2_1 File: CRR021368_f1.fastq.gz
File: CRR021368_r2.fastq.gz
CRR021369 genome of SHR2_2 File: CRR021369_f1.fastq.gz
File: CRR021369_r2.fastq.gz
CRX019640 genome of SHR1 Rattus norvegicus Illumina HiSeq 2500 SAMC016497
Run accession Run alias Run data file information
CRR021366 genome of SHR1_1 File: CRR021366_f1.fastq.gz
File: CRR021366_r2.fastq.gz
CRR021367 genome of SHR1_2 File: CRR021367_f1.fastq.gz
File: CRR021367_r2.fastq.gz
CRX019639 genome of SD Rattus norvegicus Illumina HiSeq 2000 SAMC016496
Run accession Run alias Run data file information
CRR021364 genome of SD_1 File: CRR021364_f1.gz
File: CRR021364_r2.gz
CRR021365 genome of SD_2 File: CRR021365_f1.fastq.gz
File: CRR021365_r2.fastq.gz
CRX019638 genome of russia2 Rattus norvegicus Illumina HiSeq 2000 SAMC016495
Run accession Run alias Run data file information
CRR021362 genome of russia2_1 File: CRR021362_f1.fastq.gz
File: CRR021362_r2.fastq.gz
CRR021363 genome of russia2_2 File: CRR021363_f1.fastq.gz
File: CRR021363_r2.fastq.gz
CRX019637 genome of russia1 Rattus norvegicus Illumina HiSeq 2000 SAMC016494
Run accession Run alias Run data file information
CRR021360 genome of russia1_1 File: CRR021360_f1.fastq.gz
File: CRR021360_r2.fastq.gz
CRR021361 genome of russia1_2 File: CRR021361_f1.fastq.gz
File: CRR021361_r2.fastq.gz
CRX019636 genome of Morocco Rattus norvegicus Illumina HiSeq 2000 SAMC016493
Run accession Run alias Run data file information
CRR021358 genome of Morocco_1 File: CRR021358_f1.fastq.gz
File: CRR021358_r2.fastq.gz
CRR021359 genome of Morocco_2 File: CRR021359_f1.fastq.gz
File: CRR021359_r2.fastq.gz
CRX019635 genome of Mali Rattus norvegicus Illumina HiSeq 2000 SAMC016492
Run accession Run alias Run data file information
CRR021356 genome of Mali_1 File: CRR021356_f1.fastq.gz
File: CRR021356_r2.fastq.gz
CRR021357 genome of Mali_2 File: CRR021357_f1.fastq.gz
File: CRR021357_r2.fastq.gz
CRX019634 genome of China2 Rattus norvegicus Illumina HiSeq 2000 SAMC016491
Run accession Run alias Run data file information
CRR021354 genome of China2_1 File: CRR021354_f1.gz
File: CRR021354_r2.gz
CRR021355 genome of China2_2 File: CRR021355_f1.fastq.gz
File: CRR021355_r2.fastq.gz
CRX019633 genome of China1 Rattus norvegicus Illumina HiSeq 2000 SAMC016490
Run accession Run alias Run data file information
CRR021352 genome of China1_1 File: CRR021352_f1.fastq.gz
File: CRR021352_r2.fastq.gz
CRR021353 genome of China1_2 File: CRR021353_f1.fastq.gz
File: CRR021353_r2.fastq.gz
CRX019632 genome of black_rat Rattus rattus Illumina HiSeq 2000 SAMC016489
Run accession Run alias Run data file information
CRR021348 genome of black_rat_1 File: CRR021348_f1.fastq.gz
File: CRR021348_r2.fastq.gz
CRR021349 genome of black_rat_2 File: CRR021349_f1.fastq.gz
File: CRR021349_r2.fastq.gz
CRR021350 genome of black_rat_3 File: CRR021350_f1.gz
File: CRR021350_r2.gz
CRR021351 genome of black_rat_4 File: CRR021351_f1.fastq.gz
File: CRR021351_r2.fastq.gz
CRX019631 genome of YN2 Rattus rattus Illumina HiSeq 2500 SAMC016488
Run accession Run alias Run data file information
CRR021347 genome of YN2 File: CRR021347_f1.fq.gz
File: CRR021347_r2.fq.gz
Submitter:Dong-Dong Wu (wudongdong@mail.kiz.ac.cn)
Organization:Kunming Institute of Zoology, Chinese Academy of Sciences
Date submitted:2017-09-01