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CRA000872 Information
Title: 5hmC in cfDNA as sensitive and specific biomarker for human lung cancer
BioProject: PRJCA000816 /
Release date: 2018-07-20
Files: 266
File size: 154.62 GB
Publication
Article title
5-Hydroxymethylome in Circulating Cell-free DNA as A Potential Biomarker for Non-small-cell Lung Cancer
Journal name
Genomics, Proteomics & Bioinformatics
Year
2018
DOI
10.1016/j.gpb.2018.06.002
PubMed ID
30010036

Dataset Downlaod
MetaData:
CRA000872.xlsx
Files:
HTTPS：https://download.cncb.ac.cn/gsa3/CRA000872
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FTP：ftp://download.big.ac.cn/gsa3/CRA000872

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Experiments & Runs
Experiment accession Title Taxon name Platform Sample accession
CRX025953 Lung_cancer_plasma_5hmC-Seal-Seq_46 Homo sapiens Illumina HiSeq 2500 SAMC027376
Run accession Run alias Run data file information
CRR028860 Lung_cancer_plasma_5hmC-Seal-Seq_46 File: CRR028860_f1.fastq.gz
File: CRR028860_r2.fastq.gz
CRX025952 Lung_cancer_plasma_5hmC-Seal-Seq_45 Homo sapiens Illumina HiSeq 2500 SAMC027375
Run accession Run alias Run data file information
CRR028859 Lung_cancer_plasma_5hmC-Seal-Seq_45 File: CRR028859_f1.fastq.gz
File: CRR028859_r2.fastq.gz
CRX025951 Lung_cancer_plasma_5hmC-Seal-Seq_44 Homo sapiens Illumina HiSeq 2500 SAMC027374
Run accession Run alias Run data file information
CRR028858 Lung_cancer_plasma_5hmC-Seal-Seq_44 File: CRR028858_f1.fastq.gz
File: CRR028858_r2.fastq.gz
CRX025950 Lung_cancer_plasma_5hmC-Seal-Seq_43 Homo sapiens Illumina HiSeq 2500 SAMC027373
Run accession Run alias Run data file information
CRR028857 Lung_cancer_plasma_5hmC-Seal-Seq_43 File: CRR028857_f1.fastq.gz
File: CRR028857_r2.fastq.gz
CRX025949 Lung_cancer_plasma_5hmC-Seal-Seq_42 Homo sapiens Illumina HiSeq 2500 SAMC027372
Run accession Run alias Run data file information
CRR028856 Lung_cancer_plasma_5hmC-Seal-Seq_42 File: CRR028856_f1.fastq.gz
File: CRR028856_r2.fastq.gz
CRX025948 Lung_cancer_plasma_5hmC-Seal-Seq_41 Homo sapiens Illumina HiSeq 2500 SAMC027371
Run accession Run alias Run data file information
CRR028855 Lung_cancer_plasma_5hmC-Seal-Seq_41 File: CRR028855_f1.fastq.gz
File: CRR028855_r2.fastq.gz
CRX025947 Lung_cancer_plasma_5hmC-Seal-Seq_40 Homo sapiens Illumina HiSeq 2500 SAMC027370
Run accession Run alias Run data file information
CRR028854 Lung_cancer_plasma_5hmC-Seal-Seq_40 File: CRR028854_f1.fastq.gz
File: CRR028854_r2.fastq.gz
CRX025946 Lung_cancer_plasma_5hmC-Seal-Seq_39 Homo sapiens Illumina HiSeq 2500 SAMC027369
Run accession Run alias Run data file information
CRR028853 Lung_cancer_plasma_5hmC-Seal-Seq_39 File: CRR028853_f1.fastq.gz
File: CRR028853_r2.fastq.gz
CRX025945 Lung_cancer_plasma_5hmC-Seal-Seq_38 Homo sapiens Illumina HiSeq 2500 SAMC027368
Run accession Run alias Run data file information
CRR028852 Lung_cancer_plasma_5hmC-Seal-Seq_38 File: CRR028852_f1.fastq.gz
File: CRR028852_r2.fastq.gz
CRX025944 Lung_cancer_plasma_5hmC-Seal-Seq_37 Homo sapiens Illumina HiSeq 2500 SAMC027367
Run accession Run alias Run data file information
CRR028851 Lung_cancer_plasma_5hmC-Seal-Seq_37 File: CRR028851_f1.fastq.gz
File: CRR028851_r2.fastq.gz
CRX025943 Lung_cancer_plasma_5hmC-Seal-Seq_36 Homo sapiens Illumina HiSeq 2500 SAMC027366
Run accession Run alias Run data file information
CRR028850 Lung_cancer_plasma_5hmC-Seal-Seq_36 File: CRR028850_f1.fastq.gz
File: CRR028850_r2.fastq.gz
CRX025942 Lung_cancer_plasma_5hmC-Seal-Seq_35 Homo sapiens Illumina HiSeq 2500 SAMC027365
Run accession Run alias Run data file information
CRR028849 Lung_cancer_plasma_5hmC-Seal-Seq_35 File: CRR028849_f1.fastq.gz
File: CRR028849_r2.fastq.gz
CRX025941 Lung_cancer_plasma_5hmC-Seal-Seq_34 Homo sapiens Illumina HiSeq 2500 SAMC027364
Run accession Run alias Run data file information
CRR028848 Lung_cancer_plasma_5hmC-Seal-Seq_34 File: CRR028848_f1.fastq.gz
File: CRR028848_r2.fastq.gz
CRX025940 Lung_cancer_plasma_5hmC-Seal-Seq_33 Homo sapiens Illumina HiSeq 2500 SAMC027363
Run accession Run alias Run data file information
CRR028847 Lung_cancer_plasma_5hmC-Seal-Seq_33 File: CRR028847_f1.fastq.gz
File: CRR028847_r2.fastq.gz
CRX025939 Lung_cancer_plasma_5hmC-Seal-Seq_32 Homo sapiens Illumina HiSeq 2500 SAMC027362
Run accession Run alias Run data file information
CRR028846 Lung_cancer_plasma_5hmC-Seal-Seq_32 File: CRR028846_f1.fastq.gz
File: CRR028846_r2.fastq.gz
CRX025938 Lung_cancer_plasma_5hmC-Seal-Seq_31 Homo sapiens Illumina HiSeq 2500 SAMC027361
Run accession Run alias Run data file information
CRR028845 Lung_cancer_plasma_5hmC-Seal-Seq_31 File: CRR028845_f1.fastq.gz
File: CRR028845_r2.fastq.gz
CRX025937 Lung_cancer_plasma_5hmC-Seal-Seq_30 Homo sapiens Illumina HiSeq 2500 SAMC027360
Run accession Run alias Run data file information
CRR028844 Lung_cancer_plasma_5hmC-Seal-Seq_30 File: CRR028844_f1.fastq.gz
File: CRR028844_r2.fastq.gz
CRX025936 Lung_cancer_plasma_5hmC-Seal-Seq_29 Homo sapiens Illumina HiSeq 2500 SAMC027359
Run accession Run alias Run data file information
CRR028843 Lung_cancer_plasma_5hmC-Seal-Seq_29 File: CRR028843_f1.fastq.gz
File: CRR028843_r2.fastq.gz
CRX025935 Lung_cancer_plasma_5hmC-Seal-Seq_28 Homo sapiens Illumina HiSeq 2500 SAMC027358
Run accession Run alias Run data file information
CRR028842 Lung_cancer_plasma_5hmC-Seal-Seq_28 File: CRR028842_f1.fastq.gz
File: CRR028842_r2.fastq.gz
CRX025934 Lung_cancer_plasma_5hmC-Seal-Seq_27 Homo sapiens Illumina HiSeq 2500 SAMC027357
Run accession Run alias Run data file information
CRR028841 Lung_cancer_plasma_5hmC-Seal-Seq_27 File: CRR028841_f1.fastq.gz
File: CRR028841_r2.fastq.gz
Submitter:sun baofa (sunbf@big.ac.cn)
Organization:Beijing Institute of Genomics, Chinese Academy of Sciences
Date submitted:2018-04-05