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CRA001576 Information
Title: SNP sequence
BioProject: PRJCA001410 /
Release date: 2019-06-05
Files: 622
File size: 20.50 GB
Publication
Article title
Target sequencing reveals genetic diversity, population structure, core-SNP markers, and fruit shape-associated loci in pepper varieties
Journal name
BMC Plant Biology
Year
2019
DOI
10.1186/s12870-019-2122-2
PubMed ID
31870303

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CRA001576.xlsx
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Experiments & Runs
Experiment accession Title Taxon name Platform Sample accession
CRX049440 SNP sequence in LJ-565 Capsicum Illumina HiSeq X Ten SAMC069236
Run accession Run alias Run data file information
CRR054965 first repeat of SNP sequence in LJ-565 File: CRR054965_f1.fastq.gz
File: CRR054965_r2.fastq.gz
CRR054966 second repeat of SNP sequence in LJ-565 File: CRR054966_f1.fastq.gz
File: CRR054966_r2.fastq.gz
CRX049439 SNP sequence in LJ-522 Capsicum Illumina HiSeq X Ten SAMC069235
Run accession Run alias Run data file information
CRR054963 first repeat of SNP sequence in LJ-522 File: CRR054963_f1.fastq.gz
File: CRR054963_r2.fastq.gz
CRR054964 second repeat of SNP sequence in LJ-522 File: CRR054964_f1.fastq.gz
File: CRR054964_r2.fastq.gz
CRX049438 SNP sequence in LJ-513 Capsicum Illumina HiSeq X Ten SAMC069234
Run accession Run alias Run data file information
CRR054961 first repeat of SNP sequence in LJ-513 File: CRR054961_f1.fastq.gz
File: CRR054961_r2.fastq.gz
CRR054962 second repeat of SNP sequence in LJ-513 File: CRR054962_f1.fastq.gz
File: CRR054962_r2.fastq.gz
CRX049437 SNP sequence in LJ-496 Capsicum Illumina HiSeq X Ten SAMC069233
Run accession Run alias Run data file information
CRR054959 first repeat of SNP sequence in LJ-496 File: CRR054959_f1.fastq.gz
File: CRR054959_r2.fastq.gz
CRR054960 second repeat of SNP sequence in LJ-496 File: CRR054960_f1.fastq.gz
File: CRR054960_r2.fastq.gz
CRX049436 SNP sequence in LJ-494 Capsicum Illumina HiSeq X Ten SAMC069232
Run accession Run alias Run data file information
CRR054957 first repeat of SNP sequence in LJ-494 File: CRR054957_f1.fastq.gz
File: CRR054957_r2.fastq.gz
CRR054958 second repeat of SNP sequence in LJ-494 File: CRR054958_f1.fastq.gz
File: CRR054958_r2.fastq.gz
CRX049435 SNP sequence in LJ-492 Capsicum Illumina HiSeq X Ten SAMC069231
Run accession Run alias Run data file information
CRR054955 first repeat of SNP sequence in LJ-492 File: CRR054955_f1.fastq.gz
File: CRR054955_r2.fastq.gz
CRR054956 second repeat of SNP sequence in LJ-492 File: CRR054956_f1.fastq.gz
File: CRR054956_r2.fastq.gz
CRX049434 SNP sequence in LJ-466 Capsicum Illumina HiSeq X Ten SAMC069230
Run accession Run alias Run data file information
CRR054953 first repeat of SNP sequence in LJ-466 File: CRR054953_f1.fastq.gz
File: CRR054953_r2.fastq.gz
CRR054954 second repeat of SNP sequence in LJ-466 File: CRR054954_f1.fastq.gz
File: CRR054954_r2.fastq.gz
CRX049433 SNP sequence in LJ-457 Capsicum Illumina HiSeq X Ten SAMC069229
Run accession Run alias Run data file information
CRR054951 first repeat of SNP sequence in LJ-457 File: CRR054951_f1.fastq.gz
File: CRR054951_r2.fastq.gz
CRR054952 second repeat of SNP sequence in LJ-457 File: CRR054952_f1.fastq.gz
File: CRR054952_r2.fastq.gz
CRX049432 SNP sequence in LJ-444 Capsicum Illumina HiSeq X Ten SAMC069228
Run accession Run alias Run data file information
CRR054949 first repeat of SNP sequence in LJ-444 File: CRR054949_f1.fastq.gz
File: CRR054949_r2.fastq.gz
CRR054950 second repeat of SNP sequence in LJ-444 File: CRR054950_f1.fastq.gz
File: CRR054950_r2.fastq.gz
CRX049431 SNP sequence in LJ-442 Capsicum Illumina HiSeq X Ten SAMC069227
Run accession Run alias Run data file information
CRR054947 first repeat of SNP sequence in LJ-442 File: CRR054947_f1.fastq.gz
File: CRR054947_r2.fastq.gz
CRR054948 second repeat of SNP sequence in LJ-442 File: CRR054948_f1.fastq.gz
File: CRR054948_r2.fastq.gz
CRX049430 SNP sequence in LJ-422 Capsicum Illumina HiSeq X Ten SAMC069226
Run accession Run alias Run data file information
CRR054945 first repeat of SNP sequence in LJ-422 File: CRR054945_f1.fastq.gz
File: CRR054945_r2.fastq.gz
CRR054946 second repeat of SNP sequence in LJ-422 File: CRR054946_f1.fastq.gz
File: CRR054946_r2.fastq.gz
CRX049429 SNP sequence in LJ-412 Capsicum Illumina HiSeq X Ten SAMC069225
Run accession Run alias Run data file information
CRR054943 first repeat of SNP sequence in LJ-412 File: CRR054943_f1.fastq.gz
File: CRR054943_r2.fastq.gz
CRR054944 second repeat of SNP sequence in LJ-412 File: CRR054944_f1.fastq.gz
File: CRR054944_r2.fastq.gz
CRX049428 SNP sequence in LJ-369 Capsicum Illumina HiSeq X Ten SAMC069224
Run accession Run alias Run data file information
CRR054941 first repeat of SNP sequence in LJ-369 File: CRR054941_f1.fastq.gz
File: CRR054941_r2.fastq.gz
CRR054942 second repeat of SNP sequence in LJ-369 File: CRR054942_f1.fastq.gz
File: CRR054942_r2.fastq.gz
CRX049427 SNP sequence in LJ-350 Capsicum Illumina HiSeq X Ten SAMC069223
Run accession Run alias Run data file information
CRR054939 first repeat of SNP sequence in LJ-350 File: CRR054939_f1.fastq.gz
File: CRR054939_r2.fastq.gz
CRR054940 second repeat of SNP sequence in LJ-350 File: CRR054940_f1.fastq.gz
File: CRR054940_r2.fastq.gz
CRX049426 SNP sequence in LJ-330 Capsicum Illumina HiSeq X Ten SAMC069222
Run accession Run alias Run data file information
CRR054937 first repeat of SNP sequence in LJ-330 File: CRR054937_f1.fastq.gz
File: CRR054937_r2.fastq.gz
CRR054938 second repeat of SNP sequence in LJ-330 File: CRR054938_f1.fastq.gz
File: CRR054938_r2.fastq.gz
CRX049425 SNP sequence in LJ-325 Capsicum Illumina HiSeq X Ten SAMC069221
Run accession Run alias Run data file information
CRR054935 first repeat of SNP sequence in LJ-325 File: CRR054935_f1.fastq.gz
File: CRR054935_r2.fastq.gz
CRR054936 second repeat of SNP sequence in LJ-325 File: CRR054936_f1.fastq.gz
File: CRR054936_r2.fastq.gz
CRX049424 SNP sequence in LJ-310 Capsicum Illumina HiSeq X Ten SAMC069220
Run accession Run alias Run data file information
CRR054933 first repeat of SNP sequence in LJ-310 File: CRR054933_f1.fastq.gz
File: CRR054933_r2.fastq.gz
CRR054934 second repeat of SNP sequence in LJ-310 File: CRR054934_f1.fastq.gz
File: CRR054934_r2.fastq.gz
CRX049423 SNP sequence in LJ-295 Capsicum Illumina HiSeq X Ten SAMC069219
Run accession Run alias Run data file information
CRR054931 first repeat of SNP sequence in LJ-295 File: CRR054931_f1.fastq.gz
File: CRR054931_r2.fastq.gz
CRR054932 second repeat of SNP sequence in LJ-295 File: CRR054932_f1.fastq.gz
File: CRR054932_r2.fastq.gz
CRX049422 SNP sequence in LJ-288 Capsicum Illumina HiSeq X Ten SAMC069218
Run accession Run alias Run data file information
CRR054929 first repeat of SNP sequence in LJ-288 File: CRR054929_f1.fastq.gz
File: CRR054929_r2.fastq.gz
CRR054930 second repeat of SNP sequence in LJ-288 File: CRR054930_f1.fastq.gz
File: CRR054930_r2.fastq.gz
CRX049421 SNP sequence in LJ-284 Capsicum Illumina HiSeq X Ten SAMC069217
Run accession Run alias Run data file information
CRR054927 first repeat of SNP sequence in LJ-284 File: CRR054927_f1.fastq.gz
File: CRR054927_r2.fastq.gz
CRR054928 second repeat of SNP sequence in LJ-284 File: CRR054928_f1.fastq.gz
File: CRR054928_r2.fastq.gz
Submitter:Yang Jingjing (yangjingjing@nercv.org)
Organization:Beijing Academy of Agriculture and Forestry Sciences
Date submitted:2019-05-06