Total Experiments Released Experiments Confidential Experiments
29677 11475 18202

Total Runs Released Runs Confidential Runs
31982 13718 18264
Sample Types Experiments Runs
Plant 5980 6979
Human 2543 2871
Animals 1555 2468
Microbe 593 595
Pathogen 756 756
Virus 32 33
Metagenome 16 16
Organisms Experiments Runs
Homo sapiens 2585 2903
Fagopyrum tataricum 1688 1688
Zea mays 1445 1468
Glycine max 998 1017
Oryza sativa 810 1462
Bos taurus 659 660
Triticum urartu 624 624
Mus musculus 441 573
Rattus norvegicus 246 355
synthetic metagenome 144 144
Anas platyrhynchos 130 130
Canis sp. 127 127
Ipomoea batatas 118 120
human gut metagenome 117 117
metagenome 100 99
Sus scrofa 79 394
Escherichia coli 76 76
gut metagenome 73 73
Nanorana parkeri 68 146
Rattus 48 48
Saccharina japonica 48 48
Saccharomyces cerevisiae 43 43
Drosophila melanogaster 43 43
Macaca mulatta 43 126
Arabidopsis thaliana 36 42
Litopenaeus vannamei 30 30
Influenza A virus 29 30
Plasmid vector pSP189 28 28
Ailuropoda melanoleuca 27 27
Canis lupus 24 41
Enterobacteria phage phiX174 sensu lato 23 23
Andrias davidianus 21 21
Solanum lycopersicum 20 55
Triticum aestivum 20 149
Microbiota 20 20
Bacillus licheniformis 19 19
Populus alba var. pyramidalis 18 18
Kappaphycus alvarezii 18 18
Mus 17 16
Prunus mume 15 14
Anser indicus 15 15
Hevea brasiliensis 15 15
Eospalax baileyi 14 22
Gallus gallus 14 13
Scophthalmus maximus 13 42
Nicotiana tabacum 12 12
Danio rerio 12 24
Rosa odorata 12 12
Ovis ammon 11 11
Bos grunniens 9 9
Rosa chinensis 9 9
Rangifer tarandus 9 18
Cucumis sativus 8 12
Mycobacterium tuberculosis 8 8
Gastrodia elata 8 45
Rattus rattus 8 12
Elaphurus davidianus 8 25
Oreochromis niloticus 7 6
Siraitia grosvenorii 7 59
Ochotona curzoniae 7 13
Macaca fascicularis 6 6
Quasipaa spinosa 6 6
Nanorana liebigii 6 6
Nanorana pleskei 6 6
Valsa mali 6 6
Drosophila 6 24
Populus x canadensis 6 6
Lilium 6 18
Cistanche deserticola 6 6
Canis lupus familiaris 5 5
Cocos nucifera 5 15
Actinidia deliciosa 4 4
Pan troglodytes 4 72
Tupaia belangeri 4 4
Oryza longistaminata 4 4
Strongylocentrotus intermedius 4 4
Populus trichocarpa 4 4
Arctium lappa 3 3
Dendrobium huoshanense 3 9
Acinetobacter baumannii 3 3
Klebsiella pneumoniae 3 3
Pseudomonas aeruginosa 3 3
Nanorana yunnanensis 3 3
Paralaudakia stoliczkana 3 3
Anser anser 3 3
Tadorna ferruginea 3 3
Mycobacterium bovis 2 2
Rattus leucopus 2 2
Umbilicaria americana 2 3
Corydoras panda 2 1
Ipomoea trifida 2 4
Coelomactra antiquata 2 2
Huperzia serrata 2 7
Anemone flaccida 2 2
Corylus heterophylla var. sutchuenensis 1 1
Eonycteris spelaea 1 1
Corylus ferox 1 1
Rhinolophus sinicus 1 1
Corylus ferox var. thibetica 1 1
Myotis ricketti 1 1
Corylus americana 1 1
Enterobacter 1 1
Mycobacterium microti 1 1
Prunus persica 1 4
Mycobacterium africanum 1 1
Mus musculus cytomegalovirus 2 1 2
Mus sp. 1 1
human blood metagenome 1 10
Lactobacillus plantarum 1 1
Triticum dicoccoides 1 4
Ixodes persulcatus 1 3
Corylus mandshurica 1 1
Corylus yunnanensis 1 1
Cuon alpinus 1 10

Platforms Experiments Runs
Illumina HiSeq 2500 6035 6991
Illumina HiSeq 2000 3398 4187
Illumina HiSeq X-10 503 641
Ion Torrent PGM 398 404
Illumina MiSeq 396 396
Illumina HiSeq 4000 250 372
Complete Genomics 118 120
Illumina HiScanSQ 72 72
Illumina HiSeq 3000 54 90
AB SOLiD System 3.0 43 43
PacBio RS 42 149
Illumina Genome Analyzer II 31 42
Illumina Genome Analyzer 29 46
BGISEQ-500 20 20
454 GS 16 16
Illumina HiSeq 1500 15 15
Illumina Nextseq 500 12 12
PacBio RS II 9 11
AB 5500xl Genetic Analyzer 7 7
Illumina Genome Analyzer IIx 6 14
AB 3730xL Genetic Analyzer 5 5
454 GS 20 5 26
454 GS FLX Titanium 4 14
AB SOLiD 3 Plus System 3 3
BioNano IRYS 2 2
PacBio Sequel 1 17
AB 3730 Genetic Analyzer 1 3

  Submitters: 330   /   Organizations: 97


ID Organizations GSAs Experiments Runs
1 Beijing Institute of Genomics, Chinese Academy of Sciences 68 2110 2778
2 Institute of Genetics and Developmental Biology, Chinese Academy of Sciences 25 3794 4475
3 Kunming Institute of Zoology, Chinese Academy of Sciences 25 1007 1226
4 China Agricultural University 8 694 694
5 Huazhong University of Science and Technology 8 166 204
6 Institute of Zoology, Chinese Academy of Sciences 7 64 64
7 Qinghai University 7 21 21
8 Northwest A&F University 6 125 257
9 Fudan University 5 560 656
10 Beijing Forestry University 5 42 41
11 Jiangsu Normal University 4 130 134
12 CAS-MPG Partner Institute for Computational Biology, Chinese Academy of Sciences 4 89 290
13 Huazhong Agricultural University 4 48 48
14 Tianjin University 4 24 24
15 Yangzhou University 3 134 137
16 Central South University 3 91 91
17 Peking University 3 64 64
18 Sun Yat-sen University 3 11 30
19 Center of Systems Medicine, Chinese Academy of Medical Sciences, Suzhou Institute of Systems Medicine 3 10 10
20 Tsinghua University 2 148 148
21 Lanzhou University 2 29 29
22 Yunnan University 2 27 27
23 Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College 2 20 20
24 Northwestern Polytechnical University 2 17 43
25 Rubber Research Institute, Chinese Academy of Tropical Agricultural Sciences 2 15 15
26 Fuwai Hospital, Chinese Academy of Medical Sciences 2 10 9
27 Jiangxi Agricultural University 2 8 24
28 Peking Union Medical College Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College 2 4 4
29 National Key Laboratory of Crop Genetic Improvement 1 1428 1451
30 Beijing Anzhen Hospital, Capital Medical University 1 196 196
31 Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences 1 120 120
32 Zhejiang University 1 31 31
33 Guangdong Ocean University 1 30 30
34 China-Japan Friendship Hospital 1 29 30
35 Sichuan Provincial People’s Hospital and Affiliated Hospital of University of Electronic Science and Technology 1 20 30
36 Institute of Dermatology and Hospital for Skin Diseases, Chinese Academy of Medical Sciences & Peking Union Medical Collage 1 15 15
37 Beijing Cancer Hospital 1 13 26
38 The University of Hong Kong 1 13 13
39 Institute of Medical Biology, Chinese Academy of Medical Sciences 1 12 12
40 Institute of Modern Physics, Chinese Academy of Sciences 1 12 12
41 Institute of Animal Sciences, Chinese Academy of Agricultural Sciences 1 9 9
42 Institute of Hydrobiology, Chinese Academy of Sciences 1 7 6
43 Shanghai Jiaotong University School of Medicine 1 6 11
44 Nanjing University of Aeronautics and Astronautics 1 6 6
45 Beijing Academy of Agriculture and Forestry Sciences 1 6 6
46 Northeast Forestry University 1 6 6
47 Chongqing University 1 6 6
48 LemonData Biotech co., LTD 1 6 6
49 Ocean University of China 1 4 24
50 Dalian Ocean University 1 4 4
51 Nanjing Agriculture University 1 3 20
52 Nanjing Forestry University 1 3 9
53 Tongji University 1 3 6
54 Wuhan University 1 3 3
55 Liaoning University of Traditional Chinese Medicine 1 3 3
56 Institute of Plant Physiology & Ecology, Chinese Academy of Sciences 1 2 7
57 Huaihai Institute of Technology 1 2 2
58 Hubei University of Chinese Medicine 1 2 2
59 Institute of Crop Sciences, Chinese Academy of Agricultural Sciences 1 1 4
60 Henan Agricultural University 1 1 2
61 Hainan University 1 1 1

  Top 20 downloads

Accession File size(GB) Download size (GB) BioProject Release date
CRA000112 5,617 51,286 PRJCA000246 2016-09-09
CRA000108 3,158 34,433 PRJCA000241 2017-07-13
CRA000083 6,076 8,751 PRJCA000205 2017-10-09
CRA000345 1,840 5,041 PRJCA000251 2017-12-08
CRA000096 1,612 4,551 PRJCA000224 2017-11-22
CRA000114 1,594 4,192 PRJCA000248 2017-12-12
CRA000026 258 3,753 PRJCA000131 2016-12-31
CRA000297 364 3,698 PRJCA000484 2018-03-09
CRA000332 554 1,831 PRJCA000476 2017-12-17
CRA000175 576 1,797 PRJCA000335 2017-10-23
CRA000048 1,679 1,686 PRJCA000169 2018-08-22
CRA000626 3,669 1,632 PRJCA000610 2018-05-29
CRA000004 341 1,600 PRJCA000091 2016-01-01
CRA000651 861 1,528 PRJCA000647 2017-12-27
CRA000126 277 1,426 PRJCA000269 2016-11-04
CRA000747 2,060 1,283 PRJCA000740 2018-08-21
CRA000173 616 1,233 PRJCA000333 2017-02-13
CRA000100 1,067 1,067 PRJCA000230 2016-05-05
CRA000608 266 1,050 PRJCA000642 2017-11-12
CRA000258 375 846 PRJCA000446 2017-05-15

  Total journals: 46   /   Total articles: 69

ID Journal Article title Publish date GSA BioProject
1 Cell 3D Chromatin Structures of Mature Gametes and Structural Reprogramming during Mammalian Embryogenesis. 2017-07 CRA000108 PRJCA000241
1 Cell Chromatin Accessibility Landscape in Human Early Embryos and Its Association with Evolution 2018-03 CRA000297 PRJCA000484
1 Nature m6A modulates haematopoietic stem and progenitor cell specification 2017-09 CRA000275 PRJCA000469
1 Nature Genome sequence of the progenitor of wheat A subgenome Triticum urartu 2018-05 CRA000205 PRJCA000369
1 Proceedings of the National Academy of Sciences of the United States of America Extremely high genetic diversity in a single tumor points to prevalence of non-Darwinian cell evolution 2015-11 CRA000004 PRJCA000091
1 Proceedings of the National Academy of Sciences of the United States of America Integrated analysis of phenome, genome, and transcriptome of hybrid rice uncovered multiple heterosis-related loci for yield increase 2016-10 CRA000026 PRJCA000131
1 Proceedings of the National Academy of Sciences of the United States of America Mediator subunit MED25 links the jasmonate receptor to transcriptionally active chromatin 2017-10 CRA000278 PRJCA000475
1 Nature Communications Loss of Asxl2 leads to myeloid malignancies in mice 2017-06 CRA000122 PRJCA000259
1 Nature Communications Precise control of SCRaMbLE in synthetic haploid and diploid yeast 2018-05 CRA000723 PRJCA000730
1 Cell Research Loss of 5-hydroxymethylcytosine is linked to gene body hypermethylation in kidney cancer 2016-01 CRA000010 PRJCA000102
1 Cell Research 5-methylcytosine promotes mRNA export — NSUN2 as the methyltransferase and ALYREF as an m5C reader 2017-05 CRA000162 PRJCA000315
1 Cell Research Integrated genomic analysis identifies deregulated JAK/STAT-MYC-biosynthesis axis in aggressive NK-cell leukemia. 2017-11 CRA000096 PRJCA000224
1 Genome Biology Differentiated demographic histories and local adaptations between Sherpas and Tibetans 2017-06 CRA000112 PRJCA000246
1 Genome Biology RNA m6A methylation participates in regulation of postnatal development of the mouse cerebellum 2018-05 CRA000472 PRJCA000543
1 American Journal of Human Genetics Ancestral Origins and Genetic History of Tibetan Highlanders 2016-09 CRA000112 PRJCA000246
1 Cell Stem Cell Zika Virus Disrupts Neural Progenitor Development and Leads to Microcephaly in Mice 2016-11 CRA000128 PRJCA000267
1 Current Biology Convergent Evolution of Rumen Microbiomes in High-Altitude Mammals 2016-07 CRA000017
CRA000018
CRA000019
PRJCA000114
PRJCA000115
PRJCA000116
1 Front Cell Infect Microbiol The Bioinformatics Analysis of Comparative Genomics of Mycobacterium tuberculosis Complex (MTBC) Provides Insight into Dissimilarities between Intraspecific Groups Differing in Host Association, Virulence, and Epitope Diversity 2017-03 CRA000155 PRJCA000307
1 Genome Research LTR-mediated retroposition as a mechanism of RNA-based duplication in metazoans 2016-12 CRA000015
CRA000020
CRA000138
CRA000139
PRJCA000123
PRJCA000124
PRJCA000279
PRJCA000280
1 Journal of Cell Science ESCRT-0 complex modulates Rbf-mutant cell survival by regulating Rhomboid endosomal trafficking and EGFR signaling 2016-05 CRA000094 PRJCA000222
1 Molecular Biology and Evolution Down-Regulation of EPAS1 Transcription and Genetic Adaptation of Tibetans to High-Altitude Hypoxia 2017-04 CRA000129
CRA000126
PRJCA000268
PRJCA000269
1 Scientific Reports A Comprehensive Mouse Transcriptomic BodyMap by RNA-seq 2017-06 CRA000240 PRJCA000427
1 Scientific Reports Fish gut-liver immunity during homeostasis or inflammation revealed by integrative transcriptome and proteome studies 2016-11 CRA000085 PRJCA000207
1 Stem Cell Reports Loss of Asxl1 Alters Self-Renewal and Cell Fate of Bone Marrow Stromal Cells, Leading to Bohring-Opitz-like Syndrome in Mice 2016-06 CRA000104 PRJCA000236
1 Molecular Plant The Tartary Buckwheat Genome Provides Insights into Rutin Biosynthesis and Abiotic Stress Tolerance. 2017-09 CRA000225
CRA000226
CRA000227
CRA000228
CRA000229
CRA000230
PRJCA000400
PRJCA000401
PRJCA000402
PRJCA000403
PRJCA000404
PRJCA000407
1 The Plant Cell MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. 2017-08 CRA000221
CRA000222
CRA000249
PRJCA000395
PRJCA000396
PRJCA000440
1 Genes Genome-Wide Identification and Characterization of Salinity Stress-Responsive miRNAs in Wild Emmer Wheat (Triticum turgidum ssp. dicoccoides). 2017-06 CRA000238 PRJCA000426
1 Genomics Proteomics Bioinformatics Ribosome Profiling Reveals Genome-wide Cellular Translational Regulation upon Heat Stress in Escherichia coli. 2017-10 CRA000347 PRJCA000608
1 Front Cell Infect Microbiol Splenic microRNA Expression Profiles and Integration Analyses Involved in Host Responses to Salmonella enteritidis Infection in Chickens. 2017-08 CRA000315 PRJCA000485
1 Journal of Human Genetics Phylogeny of Y-chromosome haplogroup C3b-F1756, an important paternal lineage in Altaic-speaking populations. 2017-10 CRA000235 PRJCA000419
1 GigaScience Draft genome of the Marco Polo Sheep (Ovis ammon polii). 2017-12 CRA000260 PRJCA000449
1 Molecular Genetics and Genomics Whole sequence analysis indicates a recent southern origin of Mongolian Y-chromosome C2c1a1a1-M407 2017-12 CRA000194 PRJCA000359
1 Schizophrenia Research Analysis of gut microbiota diversity and auxiliary diagnosis as a biomarker in patients with schizophrenia: A cross-sectional study 2018-01 CRA000653 PRJCA000673
1 European Journal of Human Genetics Whole-sequence analysis indicates that the Y chromosome C2*-Star Cluster traces back to ordinary Mongols, rather than Genghis Khan 2018-01 CRA000236 PRJCA000420
1 Molecular Biology and Evolution Out of Southern East Asia of the Brown Rat Revealed by Large-Scale Genome Sequencing 2018-01 CRA000345 PRJCA000251
1 PLoS Pathog A role for small RNA in regulating innate immunity during plant growth 2018-01 CRA000618 PRJCA000650
1 Frontiers in Plant Science Constitutive Expression of miR408 Improves Biomass and Seed Yield in Arabidopsis 2018-01 CRA000553 PRJCA000613
1 Cell Death and Differentiation TMCO1 is essential for ovarian follicle development by regulating ER Ca2+ store of granulosa cells 2018-01 CRA000296 PRJCA000482
1 Journal of Human Genetics The uncertainty of population relationship and divergence time inferred by the multiple sequentially Markovian coalescent model. 2018-03 CRA000539 PRJCA000600
1 Zoological Research Complete mitochondrial genome of the Thai Red Junglefowl (Gallus gallus) and phylogenetic analysis. 2018-03 CRA000143 PRJCA000287
1 Journal of Molecular Cell Biology MeCP2 deficiency promotes cell reprogramming by stimulating IGF1/AKT/mTOR signaling and activating ribosomal protein-mediated cell cycle gene translation. 2018-03 CRA000764 PRJCA000763
1 BioRxiv Draft genome of the Reindeer (Rangifer tarandus) 2017-06 CRA000262 PRJCA000451
1 BioRxiv DNA local structure decreases mutation rates 2018-04 CRA000570 PRJCA000622
1 Frontiers in Microbiology Tachyplesin Causes Membrane Instability That Kills Multidrug-Resistant Bacteria by Inhibiting the 3-Ketoacyl Carrier Protein Reductase FabG. 2018-05 CRA000801 PRJCA000788
1 BMC Genomics Direct measurement of pervasive weak repression by microRNAs and their role at the network level 2018-05 CRA000921 PRJCA000381
1 PLoS One Complete Sequence and Analysis of Coconut Palm (Cocos nucifera) Mitochondrial Genome 2016-10 CRA000123 PRJCA000261
1 Industrial Crops and Products Identification and characterization of long non-coding RNAs involved in the formation and development of poplar adventitious roots 2018-04 CRA000744 PRJCA000745
1 Proceedings of the Royal Society B: Biological Sciences Seasonal variation in nutrient utilization shapes gut microbiome structure and function in wild giant pandas 2017-09 CRA000202 PRJCA000366
1 BMC Genomics Global transcriptome analysis of Huperzia serrata and identification of critical genes involved in the biosynthesis of huperzine A 2017-03 CRA000188 PRJCA000351
1 BMC Genomics High-sensitivity HLA typing by Saturated Tiling Capture Sequencing (STC-Seq) 2018-01 CRA000645 PRJCA000665
1 PeerJ Preprints Transcriptome analysis of Valsa mali reveals its response mechanism to the biocontrol actinomycete Saccharothrix yanglingensis Hhs.015 2018-02 CRA000693 PRJCA000699
1 Theranostics Microvesicles as Potential Biomarkers for the Identification of Senescence in Human Mesenchymal Stem Cells 2017-06 CRA000160 PRJCA000325
1 Frontiers in Genetics Whole Exome Sequencing Identified a Novel Heterozygous Mutation in HMBS Gene in a Chinese Patient With Acute Intermittent Porphyria With Rare Type of Mild Anemia 2018-04 CRA000851 PRJCA000809
1 Journal of Genetics and Genomics Genome wide abnormal DNA methylome of human blastocyst in assisted reproductive technology 2017-10 CRA000114 PRJCA000248
1 Frontiers in Cellular and Infection Microbiology Detection of Pulmonary Infectious Pathogens From Lung Biopsy Tissues by Metagenomic Next-Generation Sequencing 2018-06 CRA000937 PRJCA000880
1 Cell Stem Cell Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming 2018-06 CRA000932 PRJCA000878
1 Nucleic Acids Research Genome wide analyses uncover allele-specific RNA editing in human and mouse 2018-07 CRA000575 PRJCA000627
1 The Plant Cell A Core Regulatory Pathway Controlling Rice Tiller Angle Mediated by the LAZY1-dependent Asymmetric Distribution of Auxin 2018-06 CRA000335 PRJCA000470
1 Frontiers in Plant Science Comparative Genomics and Phylogenetic Analysis Revealed the Chloroplast Genome Variation and Interspecific Relationships of Corylus (Betulaceae) Species 2018-07 CRA000795 PRJCA000786
1 Genomics Proteomics Bioinformatics 5-Hydroxymethylome in Circulating Cell-free DNA as A Potential Biomarker for Non-small-cell Lung Cancer. 2018-07 CRA000872 PRJCA000816
1 Proceedings of the National Academy of Sciences of the United States of America Selection and environmental adaptation along a path to speciation in the Tibetan frog Nanorana parkeri 2018-05 CRA000918 PRJCA000443
1 Science China Life Sciences De novo assembly of a Chinese soybean genome 2018-07 CRA001007 PRJCA000902
1 PloS One Genomic sequencing identifies a few mutations driving the independent origin of primary liver tumors in a chronic hepatitis murine model 2017-11 CRA000681
CRA000682
PRJCA000422
PRJCA000423
1 Cancer Research Multiregional sequencing reveals genomic alterations and clonal dynamics in primary malignant melanoma of the esophagus 2017-11 CRA000346 PRJCA000536
1 European Journal of Human Genetics Paternal origin of Paleo-Indians in Siberia: insights from Y-chromosome sequences 2018-07 CRA000235
CRA000236
CRA000243
PRJCA000419
PRJCA000420
PRJCA000430
1 European Journal of Human Genetics Mitochondrial genomes uncover the maternal history of the Pamir populations 2017-11 CRA000330 PRJCA000486
1 Genes & Genomics Comparative transcriptome analysis of tube feet of different colors in the sea urchin Strongylocentrotus intermedius 2017-11 CRA000134 PRJCA000276
1 Animal Genetics Genomic variation in Pekin duck populations developed in three different countries as revealed by whole-genome data. 2018-02 CRA000523 PRJCA000547
1 National Science Review Structural variation during dog domestication: insights from grey wolf and dhole genomes 2018-07 CRA000199
CRA000955
CRA000973
PRJCA000364
PRJCA000895
PRJCA000904

Agencies GSAs Experiments Runs
National Natural Science Foundation of China (NSFC) 6 662 897
Chinese Academy of Sciences (CAS) 4 58 365